Discontinuous molecular dynamics for semiflexible ...



Title Discontinuous molecular dynamics for semiflexible and rigid bodies
Author(s) L. H. de la Pena, R. van Zon, J. Schofield, Sheldon B. Opps
Journal Journal of Chemical Physics
Date 2007
Volume 126
Issue 7
Start page 074105
End page 074105
Abstract A general framework for performing event-driven simulations of systems with semiflexible or rigid bodies interacting under impulsive forces is outlined. The method consists of specifying a means of computing the free evolution of constrained motion, evaluating the times at which interactions occur, and determining the consequences of interactions on subsequent motion. Algorithms for computing the times of interaction events and carrying out efficient event-driven simulations are discussed. The semiflexible case and the rigid case differ qualitatively in that the free motion of a rigid body can be computed analytically and need not be integrated numerically. (c) 2007 American Institute of Physics.
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